Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015938529.1_cds_XP_016483370.1_74491
CDS Infomation

[gene=LOC107804064] [db_xref=GeneID:107804064] [protein=polygalacturonate 4-alpha-galacturonosyltransferase-like] [protein_id=XP_016483370.1] [location=join(131062..131155,136165..136199,136314..136373,136473..136610,136724..136799,136881..136927,137161..137495,137596..137953,138237..138824,139106..139381)] [gbkey=CDS]
Sequence

ATGGCATTGAAGAGGGGATTATCTGGTGTAGGCTACCCTATTGTGGTTCTCGTGTTCTGT
TCATATCTGGGCCTGTACAGCTCTACTTCAATTGATCATAATGATTTTTCAACCACTTCA
AGTAAGCAGGAGTTAGACTGGAGAGAGAGGCTTGCTTTGCAACATATTAAACCTTTGTTG
ACAACAAAGGTGTTTGATGTCATCAAAGCCAGTGCAGATGATTTAGGACCTTTCAGTCTT
GACTCATTCAGAAAGAAGAATTTGTCTGCATTCTGGCAATCTGTCGGTGAAGAAAGCTTG
GCCAAGAGCCATACTAATAATGTAGAGGGAAATGAGCCAAATCAGATAGCTGCATATGTC
AAAACGGAGATCTCCAGAGGCAAACAGGATGATCTTGTAGATGATGATCGTTCTCAGTTT
TTGGATGCACCTGCTATTTTGGCCAGAAGGCAACTGAGAGAGAGGAGACGCGAAAAGCAT
GATGCTGCTTTAGTGAAACAAGATGATGAGGTAACTGTGAAGCTTGAAAATGCTGCCCTT
GAACGCTCTAAGTCAGTTGACTCTGCTGTGCTGGGAAAGTATAGCATATGGAGGAAAGAG
AATGAAAATGAGAATACTGATTCAAAGGTACGCTTGATGCGAGACCAAATGGTTATGGCA
AGGGTGTATATAAGCATTGCAACAATGAAGAAAAAGATTGGCTTGGCTCAAGAGTTACAG
AATCAGCTTAAAGAAAGTCAGCATGCATTAGGTGAAGCAACATCTGATGCTGATCTAACT
CACAGTGCACATGAGAAGATTAAATCAATGGGCCAAGTGCTTTCAAAAGCTAAAGAGCAG
CTCTATGACTGCAAGCTTGTCACGGGGAAGCTGAGAGCAACGCTGCAATCTGCCGATGAG
CAAGTTAGAAGTTTGAAGAGGCAGAGCACTTTTTTGAGCCAATTAGCTGCAAAAACCATT
CCAAATGGTATCCACTGCTTATCCATGCGTCTGACTATTGATTATTACCTCCTCCCTCCT
GAAAAAAGAAAGTTCCCTAGACGTGAGAATCTGGAAAATCCTAGTCTTTTCCATTATGCC
CTATTCTCTGACAATGTTTTGGCCGCTTCAGTAGTTGTCAACTCAACTATCATGAATGCT
AAGGAACCAGCAAAACATGTATTTCATCTTGTCACTGATAAGTTGAATTTTGGAGCTATG
AATATGTGGTTCTTGCTGAACCCTCCTGGAAAAGCTACAATCCATGTTGAAAATGTCGAC
GAGTTCAAGTGGCTTAATTCTTCATACTGTCCTGTCCTACGGCAGCTAGAGTCTGCTGCT
ATGAAGGAGTACTATTTCAAGGGTGCACATTCCACCACGCTATCAGCTGGTTCTTCTAAT
TTGAAGTACCGGAACCCCAAATATCTTTCAATGCTCAATCACCTCAGATTTTATCTCCCT
CAGATTTATCCCAAATTAGATAAAATCCTTTTTCTTGATGATGATATTGTTGTTCAGCAA
GACTTGACGGGACTATGGTCTGTAAATCTTCATGAGAAAGTAAATGGTGCTGTTGAAACA
TGCGGTCAGAGTTTTCACCGTTTTGACAAGTATCTAAATTTCTCAAATCCTCATATTGCC
AAAAACTTTGATCCAAATGCTTGCGGTTGGGCATATGGGATGAACATTTTTGATCTGAAG
GAGTGGAAGAAGAGAGATATAACTGGTATATATCACAAGTGGCAAAACATGAATGAAGAC
AGGGTCCTCTGGAAGCTAGGGACACTGCCTCCAGGGCTAATGACATTTTACGGGCTTACA
CATCCGCTGGATAAGTCATGGCATGTTCTAGGTTTGGGTTACAGCCCAAGTATCGATAGG
TCAGAAATTGAGAATGCAGCTGTGATACACTACAATGGGAACATGAAACCATGGCTAGAG
TTGGCAATGACAAAGTACAGGTCATACTGGGCCAAATATATTAAGTTTGATCATCCATAC
ATTCACAGCTGCAAACTAGGTGAATGA

Peptide Sequence

PEP ID

XP_016483370.1
PEP Infomation

PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase-like [Nicotiana tabacum]
Sequence

MALKRGLSGVGYPIVVLVFCSYLGLYSSTSIDHNDFSTTSSKQELDWRERLALQHIKPLL
TTKVFDVIKASADDLGPFSLDSFRKKNLSAFWQSVGEESLAKSHTNNVEGNEPNQIAAYV
KTEISRGKQDDLVDDDRSQFLDAPAILARRQLRERRREKHDAALVKQDDEVTVKLENAAL
ERSKSVDSAVLGKYSIWRKENENENTDSKVRLMRDQMVMARVYISIATMKKKIGLAQELQ
NQLKESQHALGEATSDADLTHSAHEKIKSMGQVLSKAKEQLYDCKLVTGKLRATLQSADE
QVRSLKRQSTFLSQLAAKTIPNGIHCLSMRLTIDYYLLPPEKRKFPRRENLENPSLFHYA
LFSDNVLAASVVVNSTIMNAKEPAKHVFHLVTDKLNFGAMNMWFLLNPPGKATIHVENVD
EFKWLNSSYCPVLRQLESAAMKEYYFKGAHSTTLSAGSSNLKYRNPKYLSMLNHLRFYLP
QIYPKLDKILFLDDDIVVQQDLTGLWSVNLHEKVNGAVETCGQSFHRFDKYLNFSNPHIA
KNFDPNACGWAYGMNIFDLKEWKKRDITGIYHKWQNMNEDRVLWKLGTLPPGLMTFYGLT
HPLDKSWHVLGLGYSPSIDRSEIENAAVIHYNGNMKPWLELAMTKYRSYWAKYIKFDHPY
IHSCKLGE

Transcript Sequence

Gene sequence data has not been registered.